Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015885129.1_cds_XP_016439103.1_34692
CDS Infomation

[gene=LOC107765031] [db_xref=GeneID:107765031] [protein=DNA repair protein RAD16-like] [protein_id=XP_016439103.1] [location=join(37483..37522,38565..38687,38959..40160,40776..40898,40974..41047,41277..41337,41435..41581,41667..41752,42158..42227,47802..47927,48407..48634,49223..49327,49420..49572,49820..49908,49979..50059,50758..50830)] [gbkey=CDS]
Sequence

ATGAAGCTCCGTTCTTTCCGTCCTTCGTCTTCGATCAAAGGAGAAGGAAACTACCAATAT
CAGGATAGCTCTGATGAGGATAGCTCATCAAAAAAAGAGGATAATGAGGATGGTTTTCTT
CCTATGTCTTCGGATTCAGATTACATCGGAAGCAGTGACGAAGACGAAGATATATTTAAT
TTGTTGAGGGTAGCCCAAACTAATGGAGTTCTTGATAATGATTTCAGCGAGGAAGTTTTG
TCCAATATAATAAAAAGAAGGAAAGTGGGATCCTCTAGAAAGAGGGGCAGTAAGAATATC
AAATCAAACGAAGAGCAGGTAGAAGAGGAGCATGTAGATAGGATGATGAATGAAGTAGGA
TGTGGGGTTGAAGTAGATAGTGGCTACCGTCTATTGATGGGGAGGATAGAGGATAGGAAG
AAGAACCGCGACAAGAATAAAAAGAAGAGACCCACTTTGATGTGGGAGATCTGGGAAGAA
GAGAATGATCGGTGGATGGCTGAAAACTATACAAATGATTTAGACTTGGATTGTCAGAAC
GGGTTGGTGAATGATACTGCTGAGACACCATCTGATTTGCTTATGCCGTTGCTGAGGTAC
CAGAAAGAGTGGTTGGCTTGGGCATTGAAGCAAGAAGAATCTACTGCTAGAGGCGGTATT
CTTGCCGATGAGATGGGGATGGGAAAGACTGTTCAAGCCATAGCTCTTGTGCTTGCTAAA
CGCGAATTAGGGCAAGCAATTTCTGAATCCAGTTTACTGTCATCTGCCCCTTGTACTTCC
CAGGAGCTCCCAGCAGTGAAAGGAACTCTTGTTATATGTCCTGTTGTTGCTGTGATTCAG
TGGGTCAGTGAGATTGACCGCTTTACCACTAAAGGAAGCAACAAAATTCTTGTTTATCAT
GGTGCAAACAGGGAGAAAAATATCCACAAATTCGCAGAATATGATTTTGTTATCACCACA
TACTCCACAGTGGAGGCTGAGTATAGGAAAAATGTGATGCCACCAAAAGAAAAATGCCAG
TGGTGTGGAAAATCTTTTTATGAACAAAAGTTGTCTGTTCACCAGAGATACTTCTGTGGA
CCAGATGCTGTTAGAACTGCTAAGCAATTAAAGCAGGAGAGGAAGAAGTCAAAACCTGGA
GGAAAGACGTCAAAGCTGAAAAAAGAATCTATTAAAGGCAAGGCTAAGACAGACAGTGAT
TCAGAGATTGAGACAGGTAGTAAAAGAGGTCGTGGGAAGGGTGTGAAGCGCAAGATCAAG
ACAGATGCCAGTTCTATTGATGATGCAGCCGGTGTTGATCAAGATATGATCACGAGGAAG
TCAATTTTGCACTCTGTAAAATGGAACCGTATCATTTTGGATGAGGCCCATTATGTGAAA
GATAGACGCTGCAATACTACAAGAGCTATTTTTGCGTTAGAATCTTCTTATAAGTGGGCG
TTAAGTGGTACTCCCCTCCAGAACCGTGTAGGAGAGTTGTACTCGCTTGTTCGTTTCCTG
CAAATGATTCCTTACTCGTACTACTTCTGCAAAGATTGTGATTGCAGAGTGTTGGACTAT
AGCCCAACCGACTGCCCACATTGCCCCCACAAATCTGTTCGGCACTTTTGTTGGTGGAAT
AAATATATTGCCTCACCCATACAATCTCAAGGGAATCGTGGGACTGGAAGAGATGCGATG
GTTTTGTTGAAACACAAAATTTTGAAAAGCATATTGCTAAGACGTACTAAAAAGGGAAGG
GCTGCTGATCTTGCGCTTCCTCCCAGGATTGTTACCTTGCGCAAAGATTCTTTGGATGTT
AAAGAAGAAGACTACTACACATCACTGTACAATGAAAGCCAGGCACAATTTAATACATAC
ATTCAAGCTGGTACTCTGATGAATAACTATGCTCACATTTTTGATCTACTCACACGGCTG
CGACAGGCAGTTGATCATCCTTACCTTGTGGTATACTCTAGTACTGCTTTGGCTAGAAGT
GGAAACACTGATGATTCTGGCTATGTTGAACAACCATGTGGTTTATGTCATGATCCAGTA
GAAGATCCAGTTGTTGCTTCTTGCACACATGTCTTTTGCAAGTCATGTCTGATAGATTTT
TCTGCAACTGTGGGGCAAGTGTCATGCCCTTCATGTTCTAAACCACTTGCAGTGGATTTC
ACTGCAAATGACAAGGGGGATCAGAAAACTAAACCGACTGTCAAAGGGTTTAGGTCATCA
AGTATACTGAACAGAATTCGTCTTAATGATTTCCAGACAAGCACAAAAATAGATGCTTTG
AGAGAAGAAATAAGGTTCATGGTTGAAAGAGATGGTTCTGCAAAAGCAATAGTTTTCAGC
CAATTCACATCGTTTTTGGATCTGATACACTATTCTCTACAGAAGTCGGGTATCAGTTGT
GTTCAATTAGTTGGATCCATGTCTATAACTGCAAGAGATTCTGCAATTACAAGATTTACC
GAGGATCCAGATTGCAGGATATTCCTTATGAGCTTAAAAGCTGGAGGTGTTGCCCTCAAT
CTTACAGTGGCATCGCATGTTTTCTTGATGGATCCTTGGTGGAATCCTGCTGTGGAGCAG
CAAGCCCAAGATAGAATCCATCGAATAGGGCAGTATAAACCAATCAGGATTGTGAGATTT
GTGATTGAGAATACAATTGAGGAGAGGATCTTAAAGTTGCAAGAGAAAAAGGAACTGGTT
TTTGAAGGGACGGTCGGTGGCTCTTCGGAGGCCTTGGGAAAACTAACAGAGGCAGACTTG
AAATTCTTGTTCGTAACCTAA

Peptide Sequence

PEP ID

XP_016439103.1
PEP Infomation

PREDICTED: DNA repair protein RAD16-like [Nicotiana tabacum]
Sequence

MKLRSFRPSSSIKGEGNYQYQDSSDEDSSSKKEDNEDGFLPMSSDSDYIGSSDEDEDIFN
LLRVAQTNGVLDNDFSEEVLSNIIKRRKVGSSRKRGSKNIKSNEEQVEEEHVDRMMNEVG
CGVEVDSGYRLLMGRIEDRKKNRDKNKKKRPTLMWEIWEEENDRWMAENYTNDLDLDCQN
GLVNDTAETPSDLLMPLLRYQKEWLAWALKQEESTARGGILADEMGMGKTVQAIALVLAK
RELGQAISESSLLSSAPCTSQELPAVKGTLVICPVVAVIQWVSEIDRFTTKGSNKILVYH
GANREKNIHKFAEYDFVITTYSTVEAEYRKNVMPPKEKCQWCGKSFYEQKLSVHQRYFCG
PDAVRTAKQLKQERKKSKPGGKTSKLKKESIKGKAKTDSDSEIETGSKRGRGKGVKRKIK
TDASSIDDAAGVDQDMITRKSILHSVKWNRIILDEAHYVKDRRCNTTRAIFALESSYKWA
LSGTPLQNRVGELYSLVRFLQMIPYSYYFCKDCDCRVLDYSPTDCPHCPHKSVRHFCWWN
KYIASPIQSQGNRGTGRDAMVLLKHKILKSILLRRTKKGRAADLALPPRIVTLRKDSLDV
KEEDYYTSLYNESQAQFNTYIQAGTLMNNYAHIFDLLTRLRQAVDHPYLVVYSSTALARS
GNTDDSGYVEQPCGLCHDPVEDPVVASCTHVFCKSCLIDFSATVGQVSCPSCSKPLAVDF
TANDKGDQKTKPTVKGFRSSSILNRIRLNDFQTSTKIDALREEIRFMVERDGSAKAIVFS
QFTSFLDLIHYSLQKSGISCVQLVGSMSITARDSAITRFTEDPDCRIFLMSLKAGGVALN
LTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELV
FEGTVGGSSEALGKLTEADLKFLFVT

Transcript Sequence

Gene sequence data has not been registered.